FASTA
>ENA|BAA20512|BAA20512.1 Cyprinus carpio (common carp) alpha-globin
ATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAAGCCCTATGGGCTAAGATCAGCCCC
AAAGCCGATGATATCGGCGCTGAAGCTCTCGGCAGAATGCTGACCGTCTACCCTCAGACC
AAGACCTACTTCGCTCACTGGGATGACCTGAGCCCTGGGTCCGGTCCTGTGAAGAAGCAT
GGCAAGGTTATCATGGGTGCAGTGGCCGATGCCGTTTCAAAAATAGACGACCTTGTGGGA
GGTCTGGCCTCCCTGAGCGAACTTCATGCTTCCAAGCTGCGTGTTGACCCGGCCAACTTC
AAGATCCTCGCACACAATGTCATCGTGGTCATCGGCATGCTCTTCCCTGGAGACTTCCCC
CCAGAGGTTCACATGTCAGTTGACAAGTTTTTCCAGAACTTGGCTCTGGCTCTCTCTGAG
AAGTACCGCTAA
GCG
!!NA_SEQUENCE 1.0
Cyprinus carpio (common carp) alpha-globin
BAA20512.1 Length: 432 Type: N Check: 1127 ..
1 ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA
51 GATCAGCCCC AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC
101 TGACCGTCTA CCCTCAGACC AAGACCTACT TCGCTCACTG GGATGACCTG
151 AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT GGCAAGGTTA TCATGGGTGC
201 AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA GGTCTGGCCT
251 CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC
301 AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG
351 AGACTTCCCC CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT
401 TGGCTCTGGC TCTCTCTGAG AAGTACCGCT AA
EMBL (abridged version)
ID BAA20512.1; SV 1; linear; unassigned DNA; STD; UNC; 432 BP.
XX
DE Cyprinus carpio (common carp) alpha-globin
XX
XX
SQ Sequence 432 BP; 97 A; 122 C; 111 G; 102 T; 0 other;
ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA GATCAGCCCC 60
AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC TGACCGTCTA CCCTCAGACC 120
AAGACCTACT TCGCTCACTG GGATGACCTG AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT 180
GGCAAGGTTA TCATGGGTGC AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA 240
GGTCTGGCCT CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC 300
AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG AGACTTCCCC 360
CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT TGGCTCTGGC TCTCTCTGAG 420
AAGTACCGCT AA 432
//
GenBank (abridged version)
LOCUS HBAZ_CAPHI 142 bp DNA linear UNC 28-NOV-2017
DEFINITION Hemoglobin subunit zeta OS=Capra hircus GN=HBZ1 PE=3 SV=2.
ACCESSION P13786
ORIGIN
1 MSLTRTERTI ILSLWSKIST QADVIGTETL ERLFSCYPQA KTYFPHFDLH SGSAQLRAHG
61 SKVVAAVGDA VKSIDNVTSA LSKLSELHAY VLRVDPVNFK FLSHCLLVTL ASHFPADFTA
121 DAHAAWDKFL SIVSGVLTEK YR
//
PIR / NBRF
>D1;BAA20512.1
Cyprinus carpio (common carp) alpha-globin , 432 bases
ATGAGTCTCT CTGATAAGGA CAAGGCTGCT GTGAAAGCCC TATGGGCTAA
GATCAGCCCC AAAGCCGATG ATATCGGCGC TGAAGCTCTC GGCAGAATGC
TGACCGTCTA CCCTCAGACC AAGACCTACT TCGCTCACTG GGATGACCTG
AGCCCTGGGT CCGGTCCTGT GAAGAAGCAT GGCAAGGTTA TCATGGGTGC
AGTGGCCGAT GCCGTTTCAA AAATAGACGA CCTTGTGGGA GGTCTGGCCT
CCCTGAGCGA ACTTCATGCT TCCAAGCTGC GTGTTGACCC GGCCAACTTC
AAGATCCTCG CACACAATGT CATCGTGGTC ATCGGCATGC TCTTCCCTGG
AGACTTCCCC CCAGAGGTTC ACATGTCAGT TGACAAGTTT TTCCAGAACT
TGGCTCTGGC TCTCTCTGAG AAGTACCGCT AA*
PHYLIP
3 41
test1 CCUCAGAAGA AAGAUGCCCC CUGCUCUGGC UGGUCAAACG G
test2 CCUCAGAAGA AAGAUGCCCG CUGCUCUGGC UGGUCAAACG G
test3 CCUCAGAAGA AAGAUGCCCU CUGCUCUGGC UGGUCAAACG G
MSF
!!AA_MULTIPLE_ALIGNMENT 1.0
stdout MSF: 131 Type: P 16/01/02 CompCheck: 3003 ..
Name: IXI_234 Len: 131 Check: 6808 Weight: 1.00
Name: IXI_235 Len: 131 Check: 4032 Weight: 1.00
Name: IXI_236 Len: 131 Check: 2744 Weight: 1.00
Name: IXI_237 Len: 131 Check: 9419 Weight: 1.00
//
1 50
IXI_234 TSPASIRPPAGPSSRPAMVSSRRTRPSPPGPRRPTGRPCCSAAPRRPQAT
IXI_235 TSPASIRPPAGPSSR.........RPSPPGPRRPTGRPCCSAAPRRPQAT
IXI_236 TSPASIRPPAGPSSRPAMVSSR..RPSPPPPRRPPGRPCCSAAPPRPQAT
IXI_237 TSPASLRPPAGPSSRPAMVSSRR.RPSPPGPRRPT....CSAAPRRPQAT
51 100
IXI_234 GGWKTCSGTCTTSTSTRHRGRSGWSARTTTAACLRASRKSMRAACSRSAG
IXI_235 GGWKTCSGTCTTSTSTRHRGRSGW..........RASRKSMRAACSRSAG
IXI_236 GGWKTCSGTCTTSTSTRHRGRSGWSARTTTAACLRASRKSMRAACSR..G
IXI_237 GGYKTCSGTCTTSTSTRHRGRSGYSARTTTAACLRASRKSMRAACSR..G
101 131
IXI_234 SRPNRFAPTLMSSCITSTTGPPAWAGDRSHE
IXI_235 SRPNRFAPTLMSSCITSTTGPPAWAGDRSHE
IXI_236 SRPPRFAPPLMSSCITSTTGPPPPAGDRSHE
IXI_237 SRPNRFAPTLMSSCLTSTTGPPAYAGDRSHE
GFF3
##gff-version 3
##sequence-region APH1A_HUMAN 1 265
#!Date 2018-08-01
#!Type Protein
#!Source-version EMBOSS 6.6.0.0
APH1A_HUMAN SWISSPROT mature_protein_region 1 265 . . . ID=APH1A_HUMAN.1;note=Gamma-secretase subunit APH-1A;ftid=PRO_0000221050
APH1A_HUMAN SWISSPROT extramembrane 1 2 . . . ID=APH1A_HUMAN.2;note=Lumenal. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 3 23 . . . ID=APH1A_HUMAN.3;note=Helical%3B Name%3D1. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 24 31 . . . ID=APH1A_HUMAN.4;note=Cytoplasmic. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 32 52 . . . ID=APH1A_HUMAN.5;note=Helical%3B Name%3D2. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 53 68 . . . ID=APH1A_HUMAN.6;note=Lumenal. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 69 89 . . . ID=APH1A_HUMAN.7;note=Helical%3B Name%3D3. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 90 118 . . . ID=APH1A_HUMAN.8;note=Cytoplasmic. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 119 139 . . . ID=APH1A_HUMAN.9;note=Helical%3B Name%3D4. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 140 158 . . . ID=APH1A_HUMAN.10;note=Lumenal. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 159 179 . . . ID=APH1A_HUMAN.11;note=Helical%3B Name%3D5. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 180 186 . . . ID=APH1A_HUMAN.12;note=Cytoplasmic. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 187 207 . . . ID=APH1A_HUMAN.13;note=Helical%3B Name%3D6. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 208 213 . . . ID=APH1A_HUMAN.14;note=Lumenal. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT transmembrane 214 234 . . . ID=APH1A_HUMAN.15;note=Helical%3B Name%3D7. {ECO:0000269|PubMed:26280335}
APH1A_HUMAN SWISSPROT extramembrane 235 265 . . . ID=APH1A_HUMAN.16;note=Cytoplasmic. {ECO:0000269|PubMed:26280335%2C ECO:0000305|PubMed:14593096}
APH1A_HUMAN SWISSPROT polypeptide_region 39 120 . . . ID=APH1A_HUMAN.17;note=AFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVS VLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYV -> RCSALPTTSCLI (in isoform 3). {ECO:0000303|PubMed:14702039};ftid=VSP_045424
APH1A_HUMAN SWISSPROT polypeptide_region 246 247 . . . ID=APH1A_HUMAN.18;note=RR -> KD (in isoform 2). {ECO:0000303|PubMed:10810093%2C ECO:0000303|PubMed:12975309%2C ECO:0000303|PubMed:14702039%2C ECO:0000303|PubMed:15489334%2C ECO:0000303|Ref.2};ftid=VSP_008355
APH1A_HUMAN SWISSPROT polypeptide_region 248 265 . . . ID=APH1A_HUMAN.19;note=Missing (in isoform 2). {ECO:0000303|PubMed:10810093%2C ECO:0000303|PubMed:12975309%2C ECO:0000303|PubMed:14702039%2C ECO:0000303|PubMed:15489334%2C ECO:0000303|Ref.2};ftid=VSP_008356
APH1A_HUMAN SWISSPROT mutated_variant_site 171 171 . . . ID=APH1A_HUMAN.20;note=H->A: Impaired gamma-secretease assembly and reduced proteolytic activity of the gamma-secretase complex. {ECO:0000269|PubMed:19369254}
APH1A_HUMAN SWISSPROT mutated_variant_site 197 197 . . . ID=APH1A_HUMAN.21;note=H->A: Impaired gamma-secretease assembly and reduced proteolytic activity of the gamma-secretase complex. {ECO:0000269|PubMed:19369254}
APH1A_HUMAN SWISSPROT sequence_conflict 236 236 . . . ID=APH1A_HUMAN.22;note=L -> I (in Ref. 8%3B AAH01230). {ECO:0000305}
APH1A_HUMAN SWISSPROT alpha_helix 3 23 . . . ID=APH1A_HUMAN.23;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 29 60 . . . ID=APH1A_HUMAN.24;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 65 102 . . . ID=APH1A_HUMAN.25;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT polypeptide_turn_motif 103 106 . . . ID=APH1A_HUMAN.26;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT beta_strand 107 109 . . . ID=APH1A_HUMAN.27;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 114 141 . . . ID=APH1A_HUMAN.28;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 156 184 . . . ID=APH1A_HUMAN.29;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 187 205 . . . ID=APH1A_HUMAN.30;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT polypeptide_turn_motif 206 208 . . . ID=APH1A_HUMAN.31;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 210 231 . . . ID=APH1A_HUMAN.32;note={ECO:0000244|PDB:5A63}
APH1A_HUMAN SWISSPROT alpha_helix 236 242 . . . ID=APH1A_HUMAN.33;note={ECO:0000244|PDB:5A63}
##FASTA
>APH1A_HUMAN Q96BI3 Gamma-secretase subunit APH-1A (APH-1a) (Aph-1alpha) (Presenilin-stabilization factor)
MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT
DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYV
SGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFD
ACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSIQ
RSLLCRRQEDSRVMVYSALRIPPED
FASTM/F
>P00001
MPPYTVVY,
VETWQEGSLK,
YGQLPKFQDGD,
VEDLRCKYI,
DYNLLDLLLIHEVLAP,
GCLDAFPLLSAY,
VGRLSARPKLKAFL,